Penalties & Late Fees: What Missed Deadlines Cost

Missing a tax deadline is rarely a disaster, but the costs add up quickly. Here's what applies to GST, income tax and TDS, and how to stay ahead.

Last updated 29 September 2026

GST

SituationWhat applies
GSTR-1 or GSTR-3B filed lateLate fee of ₹50 per day (₹20 for nil returns), subject to a cap
Tax paid lateInterest at 18% per year on the tax paid late
Annual return (GSTR-9) filed lateLate fee based on turnover, calculated automatically
Returns not filed for a long periodPossible cancellation of registration and blocked e-way bills

Income tax

SituationWhat applies
ITR filed after the due dateLate fee of ₹5,000 (₹1,000 if total income is up to ₹5 lakh)
Tax not paid by the due dateInterest, generally 1% per month on unpaid tax
Advance tax not paid or short-paidInterest on the shortfall and on missed instalments
Income under-reportedPenalty as a percentage of the tax on the under-reported income

Filing late can also mean losing the ability to carry forward certain losses.

TDS

SituationWhat applies
Tax not deducted or deducted lateInterest from the date it should have been deducted
Tax deducted but deposited lateInterest from the date of deduction until deposit
TDS return filed late₹200 per day, up to the TDS amount
TDS not deducted on an expensePart of the expense may be disallowed in your business income

How to avoid them

  • Keep a single calendar of every GST, TDS and income tax date. Ours is here.
  • Close your books monthly so returns can be prepared early.
  • Pay advance tax in instalments rather than all at year-end.
  • File nil GST returns on time, even in quiet months.
  • Respond to notices within the deadline given.

Last updated 29 September 2026. This page is general information based on the rules in force on that date, not professional advice. Tax rules, rates and due dates can change through budgets and government notifications. Contact us to confirm what applies to your situation.

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